The Resource Computational studies of RNA and DNA, J. Sponer, F. Lankas (eds.)

Computational studies of RNA and DNA, J. Sponer, F. Lankas (eds.)

Label
Computational studies of RNA and DNA
Title
Computational studies of RNA and DNA
Statement of responsibility
J. Sponer, F. Lankas (eds.)
Contributor
Subject
Language
eng
Cataloging source
Uk
Dewey number
572.8
Illustrations
illustrations
Index
index present
LC call number
QP623
LC item number
.C66 2006
Literary form
non fiction
Nature of contents
bibliography
Series statement
Challenges and advances in computational chemistry and physics
Series volume
2
Label
Computational studies of RNA and DNA, J. Sponer, F. Lankas (eds.)
Publication
Bibliography note
Includes bibliographical references and index
http://library.link/vocab/branchCode
  • net
Contents
Machine derived contents note: 1. Basics of Nucleic Acid Structure -- Bohdan Schneider and Helen M Berman 1 -- 2. Using Amber to Simulate DNA and RNA -- Thomas E. Cheatham, IH and David A. Case 45 -- 3. Theoretical Studies of Nucleic Acids and Nucleic -- Acid-Protein Complexes using Charmm -- A lexander D. MacKerell, Jr and Lennart Nilsson 73 -- 4. Continuum Solvent Models to Study the Structure -- and Dynamics of Nucleic Acids and Complexes with Ligands -- Martin Zacharias 95 -- 5 Data Mining of Molecular Dynamic Trajectories -- of Nucleic Acids -- Modesto Orozco, Agnes Nov, Tim Meyer, Manuel Rueda, -- Carles Ferrer, Antonio Valencia, Alberto Pdrez, -- Oliver Carrillo, Juan Fernandez-Recio, Xavier de la Cruz -- and F. Javier Luque 121 -- 6. Enhanced Sampling Methods for Atomistic Simulation -- of Nucleic Acids -- Catherine Kelso and Carlos Simmerling 147 -- 7. Modeling DNA Deformation -- Peter Varnai and Richard Lavery 169 -- 8. Molecular Dynamics Simulations and Free Energy -- Calculations on Protein-Nucleic Acid Complexes -- David L. Beveridge, Suijit B. Dixit, Bethany L. Kormos -- AInni M' Ban anger and B. Jayaram 211 -- 9. DNA Simulation Benchmarks as Revealed -- by X-Ray Structures -- fWfnaK. Olson, Andre; V. Colasanti, Eun Li, Wei Ge, -- Guohfi Zheng, and ictor B. 7h urkin 235 -- 10. RNA:The Cousin Left Behind Becomes a Star -- Tqrpn Sch'ick 250 -- 11. Molecul ar Dynamics Simulations of RNA Systems: -- Importance of the Initial Conditions -- Pascal Aff/ingei 283 -- 12. Molecular Dynamics Simulations of Nucleic Acids -- Sad'a Spackova Thomas E. Checatham, III and Jirl Sponr 301 -- 13. Using Computer Simulations to Study Decoding -- by the Ribosome -- Kevin Y S anhonatsu 327 -- 14. ase Stacking and Base Paiiing -- Ji Sponer cr,Peir Jurecka and Pavel vHota 343 -- 15 Interaction of Metal Cations with Nucleic Acids -- and their Building Units -- lucit E. Sponer, Jaros/as V. Burda Jrzy Le-szczynki -- and Jii Sponer 389 -- I6. Proton Transfer in DNA Base Pairs -- J. Be tan, L Biancafort, M. Noguera, M. Sodupe 411 -- 17 Comparative Study of Quantum Mechanical Methods -- Reated to Nucleic Acid Bases: Electronic Spectra, Excited -- State Structures and Interactions -- U.K. Shukla and Jerzy Leszczynski 433 -- 18. Substituent Effects on Hydrogen Bonds in DNA -- Cedlia IFonseca Gueria and F. Matthias Bickelhaupt 463 -- 19. Comput ational modeling of Charge Transfer in DNA -- Alexandcr 4. Voit/yk 485 -- 20 Quantum Chemical Calculations of NMR Paameters -- Wolfgang Schfber gei , Vladimir Sychrovs/k aind -- L ulas Tranti c 513 -- 2. The Importance of Entropic Factors m DNA Behaviour: -- Insights from Simulations -- Sarah A. Harris and Charles A. Laughton 537 -- 22 Sequence-Dependent Harmonic Deformability of Nucleic -- Acids Inferred from Atomistic Molecular Dynamics -- Filip Lankas 559 -- 23. Simulation of Equilibrium and Dynamic Properties -- of Large DNA Molecules -- Alexander Vologodskii 579 -- 24. Chromatin Simulations -- A Langawski and HL Schiesel 605
Control code
000040987409
Dimensions
25 cm
Extent
xi, 636 p.
Isbn
9781402047947
Lccn
2007398400
Other physical details
ill.
http://library.link/vocab/recordID
.b24048392
System control number
  • (OCoLC)72867746
  • springer1402047940

Library Locations

    • Deakin University Library - Geelong Waurn Ponds CampusBorrow it
      75 Pigdons Road, Waurn Ponds, Victoria, 3216, AU
      -38.195656 144.304955
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